5 results in 0.0022 seconds.
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Can Cufflinks report chimeric transcripts/fusions?
I understand that Cufflinks can report FPKM on novel transcripts (different isoforms) if using proper parameters, but I wonder whether cufflinks is able... -
ViReMa: an algorithm for finding viral recombination or fusion events in NGS data
Hi all,
I have written and made available an algorithm I wrote in Python called ViReMa: a Viral Recombination Mapper.
The... -
Secondary Alignments with BWA-MEM
When I have split reads originating from repetitive sequences I must use the -a flag to get the secondary alignments. The problem with this is that with... -
Cufflinks non-model organism, issues with -b, and false concatenation of genes
Hello,
I have been working with the "tuxedo" package for a little while now, and have started getting the nice results that I want,... -
Tophat2 with fusion search and tophat-fusion-post problems
Updated:
You must not rename any files in the tophat output directories. My scripts do this automatically, renaming the output files with...
