Hello,
I am currently trying to find the enriched pathways following a RNAseq analysis using DESeq2, in a plant species where there is no reference...
8 results in 0.0023 seconds.
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GAGE enrichment GO terms, KEGG pathways
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KEGG pathway analysis with C. elegans data: Gene name issues
Hi,
I want to do a KEGG pathway analysis with C. elegans data using Pathview/Gage in R. I've done this previously with mouse data, using... -
GAGE Pathview and gene counts
I am working on pathway analysis using GAGE and Pathview. I can determine up-regulated and down-regulated pathways and get corresponding heatmaps, but... -
How to fully use the list of DEGs in non model species?
Hi ALL,
I am a beginner of RNAseq study. I am working on the transcriptome of non model species, mussel and snail. In my first part of... -
gage - local data set
Hi,
I am trying to run gage and FGNet with my local list. But I can't seems to make it works.
I have created a gmt file... -
GO analysis of RNAseq data error
I am working on GO analysis in arabidopsis and have done the analysis bit and am working on creating the heat map and scatterplot but am getting the error... -
Annotation and org abbreviation for S. pombe in GAGE.
Hi,
I have established gage pathway on my computer. But I cannot figure out the package I need to have instead of the one mentioned in the manual... -
Error in read.table, package("gage")
Hi,
I am trying to establish gage protocol by Weijun Luo. I get the following error when I want to load the demo data:
> filename=system.file("exdata/gse16873.demo",...
