Hi,
I was hoping someone can please help me with an issue I can’t really figure out…
I ran samples on Salmon through Galaxy....
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tximport problem - won't recognize when there is an isoform and throughout data
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My NGS data. What to use: galaxy, R or ?
Hi all,
Really hope for your help, guys.
I finally got my ChIP-Seq data back. Hoping it is not too bad. You can check for...
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Ion Torrent analysis on local Galaxy
Hello everyone!
I have recently created a local galaxy instance, and I would like to run the Torrent Variant Caller (TVC) tool on it. I...
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RPy issue in Galaxy on Biolinux 8
Hi,
I am using Galaxy in BioLinux8 and having a consistent issue with RPy e.g.
Traceback (most recent call last):
...
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Galaxy Project New Releases and News
A lot has been happening in the the Galaxy Project lately. The June News of the Galaxy has details on:
- New releases of
- Galaxy, the Galaxy
- New releases of
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How do i trim multiple adapters from my RNAseq reads?
Hi all,
I am using Galaxy and I want to remove the universal adapters as well as the index adapters in each data file of my RNAseq data....
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Tophat Inner Mean Distance
Hello all,
I'm currently working on RNA-seq analysis using Galaxy. The dataset which I'm using is a paired-end data from BodyMap Project....
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Galaxy smallRNA Analysis help
Hi,
I've been playing with Galaxy lately to do my data analysis for smallRNA (Illumina).
I think I'm getting what I want but I'm stuck...
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Strand info, SNPs
Hello,
I am performing an analysis for SNPs in Galaxy UCSC, using the tools mpileup (to generate pileup from bam files) and Varscan (to...
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Low computation usage on AWS using Galaxy
Hi Everyone,
I am attempting to analyze HiSeq 2500 RNA-Seq data using a Galaxy instance run through AWS, but the analysis is taking an...
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Help getting fastq_filter.py working on command line?
I want to use galaxy's fastq_filter tool on the command line.
Basically, I already know what the inputs are required by fastq_filter...
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Visualization of whole genome DNA methylation in IGB (March 25, 11:30am-12pm EST)
“Focus on a Feature: Visualization of whole genome DNA methylation data in IGB.”
This tutorial has ended. You can find the recording her...Last edited by Nowlan Freese; 03-25-2015, 02:32 PM.