Hi everybody, i'm new in SeQanswers.
I have some sequencing data from GEO repository it is written like this:
chr1 1 ...
9 results in 0.0021 seconds.
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Extract the coordinates of the gaps between peaks.
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blastn perc_identity on matching region
Hi,
I am using blastn with the -perc_identity option. That way, blastn discards the alignments which do not fulfil a minimum % identities.... -
Samtools Depth - Filling in the gaps with 0 - Perl?
Hi everyone,
I thought that perhaps others have encountered and previously solved the following problem:
Samtools depth allows you... -
blastn m0 -> m8 bug
Hi,all
Does anyone meet this question.
Blastn Error：
Error ：m=0, E-value = e-141，Gaps=3,... -
How do i get the gap position from my .sam file?
Hi there!
For research purpose i need all the positions of gaps in my .sam file.
I took a look at them with Tablet, but i need... -
how to deal with adjoining SNPs?
Dear All,
I'm dealing with some sequencing data coming from an Illumina platform and assembled on a reference genome. We employed standard filters... -
Allowed maximum number of differences in BWA
The paper says the following:
Given a read of length m, BWA only tolerates a hit with at most k differences (mismatches or gaps), where... -
Mapping to repetitive regions
Anyone have any opinions on the best way to map to repetitive regions. In this case, we are mapping 454 reads from a specific chromosome where we have... -
Closing gaps using Solexa mate-pair data
Does anyone know any software that will close gaps between contigs using Solexa mate-pair data (insertion ~2500kb)?
