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yvancouver started a topic Allele frequency in sample below 10%

in Genomic Resequencing

10-24-2014, 12:40 AM
Allele frequency in sample below 10%

Hello,

In our pipeline we have a quality control step where 23 snps are called with GATK and with realtime PCR. Lately as the coverage...

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spreeth84 started a topic GATK reported AD and DP

in Bioinformatics

03-27-2012, 12:51 PM
GATK reported AD and DP

I am using Unified Genotyper for SNP calling. I find that the reported Allele depths and read depths seem much lower than expected (with and without the...

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