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Getting insertion counts from DNA sequence data
For matched tumor and normal pairs, we easily get insertion and deletion counts from the output of Somatic Indel Detector in GATK. However, when we run... -
GATK DepthOfCoverage at high depth
I have a sample on which custom capture was done. Many of the baits have >2000x coverage.
When running DepthOfCoverage initially I never...
