Hi,
I have some difficulties using IndelRealigner on my data. After comparing bam files before and after realignement process I find some...
4 results in 0.0028 seconds.
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using GATK IndelRealigner
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homopolymer, steps after alignment
Hello.
I am implementing my pipeline and I have to start the steps after alignment. I have see on GATK pipeline that I have to do local realignment... -
Using GATK's local realigner outside of GATK pipeline for variant calling
Hello all:
If I were to use GATK's local realigner outside of GATK pipeline, eg:
BWA -> GATK's Local Realigner ->... -
MarkDuplicates not working on CG BAM files?
Hi everyone,
I've created some BAM files from some Complete Genomics data using their conversion script so I can run it through a GATK/Picard...
