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zhoujiayi started a topic Problem in using GATK to do the realignment

in Bioinformatics

09-26-2013, 11:46 AM
Problem in using GATK to do the realignment

Hi, I am new to GATK. I met a problem when I tried to use "RealignerTargetCreator" to realign my BAM file. I got error " MESSAGE: SAM/BAM...

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swNGS started a topic GATK - RealignerTargetCreator ? need to run for all samples in the same experiment ?

in Bioinformatics

04-19-2013, 04:49 AM
GATK - RealignerTargetCreator ? need to run for all samples in the same experiment ?

Hi,

Lets say I have 20 bams derived form the same targetted sequencing experiment, and I want to push them through the recommended GATK...

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