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matan8 started a topic Continuous AF with GATK

in Bioinformatics

10-23-2012, 04:17 AM
Continuous AF with GATK

Hi,
I saw some VCF files that have a continuous AF value. In my results the AF values are either 1 or 0.5.
I am working on yeast, so the...

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wanguan2000 started a topic GATK VariantFiltration undefined variable AB

in Bioinformatics

08-03-2011, 05:52 PM
GATK VariantFiltration undefined variable AB

java -Xmx4g -jar ./GenomeAnalysisTK-1.1-12-g2d94037/GenomeAnalysisTK.jar \
-l INFO \
-nt 8 \
-R ucsc.hg19.fasta \
...

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