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GC content bias in ATCC mock reads
Hi! I have samples sequenced with NextSeq for the experiment protocol setup. We tested different kits (Nextera, Kapa, Qiagen) and apart from the donor... -
Using cqn package with EdgeR
I am doing an RNA-seq differential expression analysis, and am trying to use the cqn package with EdgeR to correct for GC content effects on estimation... -
RNA-seq and GC content bias
Dear all,
I am analyzing a dataset of RNA-seq (from Illumina Genome Analyser IIx), and have found some interesting expression pattern trends...
