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Getting the part of a genome that was NOT covered by a samples reads
I have a bunch of genomes and sample reads and am looking for a way (software and method) that I can do a sequence alignment and get an output of the... -
MaSurCa Assembler Coverage.
Hi everybody, im working with a De NOVO plant assembly and i used two differents Assemblers, Mira and Masurca, i got a problem with how to know the real... -
How to compute percentage of my genome covering human reference genome?
I have the alignment file for my genome (bam).
I want to find out % of genome that covered reference human genome with atleast 1 read, 2 reads,... -
Newbie Question: Calculating physical coverage from genome coverage
Hey guys,
I could not find a precise information of how to calculate the physical coverage from genome coverage, assuming that I have a paired...Last edited by tristanstoeber; 02-22-2012, 08:47 AM. -
Genome coverage
How do you calculate the genome coverage for a sequenced genome?
I have the BAM file for my genome, and I have calculated the read depth at each...Last edited by bioinf newbie; 02-15-2012, 01:01 PM.
