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SNP Bacterial Genomes per year
I am looking at SNP trees for bacterial genomes (mostly N. gonorrhoeae, S. aureus and E. faecium) and I am following outbreaks in society and on hospital... -
SOLiD for Genomes
Does SOLiD work well for genomes with a lot of repeats? Theoretically it should, but in practice?
Thanks, -
Untangling The Volcanic Earthworm Genome
Dear SEQanswers friends,
We have taken an earthworm genome to the final round of the 2016 SMRT Sequencing Grant Program “Explore your... -
Reciprocal blast in brig?
Hello all,
I've run BRIG and managed to get the ring image fine. I would like a list of the genes and the sequences preferably of the... -
How many human genomes sequenced so far?
Does anyone know this? The best estimate I've been able to get is from this article in which Francis de Souza puts the number at 228K by end of 2014.... -
1000 genomes human reference
Hello,
I'm using hg19.
As you may know when you perform variant calling, reference variation allele may be biased due to... -
Genome extraction from metagenomes
Hi all,
I've made a step-by-step guide on how to extract genomes from metagenomes.
The guide uses the real data we used... -
Depth & Length for individual genome reconstructrion
Our goal: to reconstruct individual genomes from a metagenome
Our method: Illumina Hiseq paired-end sequencing
What would you choose... -
download all available genomes by genus
Hi!
I`d like to get all bacterial genomes of some genus. There a lot of species already sequenced with a lot of strains as I can see in Genbank.... -
New Tools to analyze Next Gen Seq data
Dear all,
I'm currently using GATK and Samtools to analyze some NGS data from the 1000genomes project.
However I'm having...
