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Dessi started a topic assigning function to genomic coordinates

in Bioinformatics

06-26-2014, 12:13 AM
assigning function to genomic coordinates

Hi All,

I have analysed RNA-seq data and I have a bed file with genomic coordinates of mismatches to the genome (potential RNA-editing...

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foolishbrat started a topic Tools that report read count AND read names that map to genomic features.

in Bioinformatics

02-04-2014, 11:37 PM
Tools that report read count AND read names that map to genomic features.

htseq-count and coverageBed are excellent tools for reporting just how many reads map to each genomic features.

How ever to my knowledge...

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chrishawk started a topic Dmel Genomic Features files

in Bioinformatics

11-23-2010, 05:47 AM
Dmel Genomic Features files

Hi All,

I'm trying to annotate a bed file of genomic intervals. Does anyone know where I can find either a bed or gff file containing...

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