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mominchen started a topic GFF3 files for small RNA

in Bioinformatics

04-03-2017, 12:56 PM
GFF3 files for small RNA

Hi everyone,
I'm looking for gtf/gff/gff3 files for small RNA (sequencing run based on a MiSeq with small RNA kit). Does anyone know where to get...

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pshah started a topic htseq-count failure parsing GFF attribute line

in Bioinformatics

12-02-2015, 03:34 PM
htseq-count failure parsing GFF attribute line

Hi,
I am trying to generate a read counts file for my ChIP-seq data using htseq-count. Here is what I have done so far:

1. Call...

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ThePresident started a topic From GeneBank to .GFF

in Bioinformatics

01-27-2014, 10:32 PM
From GeneBank to .GFF

Hello everyone,

I'm working with an organism that doesn't have a proper .gff annotated file available on NCBI. However, I can have a full...

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tianping started a topic From GFF2 to GFF3

in Bioinformatics

04-18-2011, 01:34 AM
From GFF2 to GFF3

Dear all,

We are sequencing an animal genome and the produced GFF file is version 2. However, I learned that GFF2 is now deprecated and...

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Last edited by tianping; 04-18-2011, 02:10 AM. Reason: misleading title

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