Hi there,
I'm currently conducting a transcriptomics study on Nicotiana benthamiana, and have reached a point where i would like to conduct...
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GO enrichment, how to get GO mappings for non-native in GOseq
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RNA-seq, GO enrichment: how does GOseq package deals with missing annotations
Hi,
I'm working on a RNA-seq experiment of a non-model organism. I assembled a transcriptome using Trinity, and ran GOseq to examine for... -
GO analysis
Hi All
I am trying to choose between the following:
a) using all the genes in my genome as a background for my GO analysis
or
...Last edited by mparida; 11-07-2015, 07:02 AM. -
No GO terms in goseq output
Hi,
I am doing goseq on RNA-seq data of S. pombe. Below I am showing the last few lines of calculating the enriched GOs for my up-regulated genes.... -
gene2cat argument in goseq
Hi All,
I am currently trying to use goseq to analyze my RNAseq data. I believe I have all the required files, I just cannot seem to create... -
goseq errors
Hi All
I am using R 2.14.2 version. I have tried running the goseq tutorial code and it fails to perform the probability weighting function calculation... -
Using GOseq on only a sub-fraction of edgeR DE results
Hi!
I got a question from one of my lab mates if I could take out a certain type of genes (all coding for one certain type of proteins) and run... -
GOSeq analysis problem with geneLenDataBase
Hi!
I am doing analysis on my RNA-Seq data. When I reached to the GOSeq I encountered a problem as there is no support for the genome and... -
GO analysis for Arabidopsis with Goseq
Hi all,
I am trying to do a GO analysis for Arabidopsis RNA-seq data with Goseq. The software needs gene length information for all the genes but...Last edited by melis; 01-19-2012, 08:29 AM. -
HELP: GO analysis of non-natively supported organism using R package goseq
Hi,all
i am trying to perform GO analysis with goseq, but the organism in my work is not natively supported by the package and i am either not... -
GOseq errors
Hi
Below is the code I used and the errors returned for the GOseq R package. I would appreciate any suggestions as to how to resolve them....
