Hi:
part of my job is to process bunch of bed files in parallel by using R. I have read each bed files as GRanges objects in R. I used GenomicRanges::findOverlaps(query,...
4 results in 0.0024 seconds.
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How to iterate GRanges objects in R for parallel processing more than one bed files?
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Convert gff3 to GRanges
I downloaded the Rnor gff3 from http://mirrors.vbi.vt.edu/mirrors/ft...orvegicus/GFF/ . I can import into R and get it as... -
Convert Paired End Reads BAM file to GRanges
Hi,
I would like to know ways to convert the Paired end bam file into GRanges (R Data Structure). I have readBamGappedAlignments function...
