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Failed connection with Ensembl VEP script on port 3337
I'm using the VEP (Variant Effect Predictor) standalone Perl script to annotate some variants, it connects to the Ensembl MySql database. I used the same...
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DNA in a chromose
Hi,
I am using the GRCh37 assembly on NCBI website. My question is:
which parts of each chromosome in chr*.fa file is for DNA and...
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Download Human Genome
I want to download assembled human genome from nbci site to calculate some statistics on it. I found GRCh37 in the link below
http://www.ncbi....
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need GRCh37 database
I am trying to find variants on some bam files I got but GATK requires the exact database used for the alignment.
Apparently it is GRCh37. Any...
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LiftOver coordinate conversion question
Hi,
I'm trying to use UCSC's "LiftOver" tool to convert human genome coordinates from build 36 to build 37. Some positions and...
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RepeatMasker report of GRCh37
Hi everyone,
I recently used RepeatMasker to analyze the DNA sequences of broken fragments of some cancer patients' chromosomes. I finnaly...