Hi All,
I work with Bacillus subtilis and I want to perform some GSEA on an RNA-seq data set. Looking at the literature, I've seen that...
11 results in 0.0022 seconds.
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Obtaining gene sets for GSEA
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GSEA Leading edge analysis fails with gene set not found error
hi all!
I'm trying to run a leading edge analysis on my RNASeq data.
Hi everyone!
I'm trying to run a leading... -
Background set for GO enrichment analysis
Hello,
I determined that out of ~70'000 transcripts, ~15'000 are spatially regulated (I used the LRT method in DESeq2). The patterns of... -
Gsea
Hi,
I am new to bioinformatics,
I want to code GSEA using gene profiles derived from the GEO database and using my custom set of...Last edited by hermann; 08-10-2017, 12:19 PM. -
Circos for GSEA
Hi,
I quite like the look of Circos plots and was wondering if the following is possible before I embark on what appears to be a steep... -
GSEA and genes ranked by q value
Hi guys,
Do you know if it's correct to use GSEA preranked tool with a .rnk file composed of genes ranked by q value? (rather than fold... -
RNA-seq without replicates, type of analysis to trust.
We have two samples control and treatment without any replicates. I want to find differentially enriched / expressed transcripts in treatment over control.... -
SeqGSEA: Gene Set Enrichment Analysis of RNA-Seq Data
I am glad to introduce to you guys a new Bioconductor package, SeqGSEA, developed by our group. The detailed description of this package is:
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SeqGSEA: Gene Set Enrichment Analysis of RNA-Seq Data
I am glad to introduce to you guys a new Bioconductor package, SeqGSEA, developed by our group. The detailed description of this package is:
... -
Help needed with Nanostring data
I have data on NanoString for samples with two different phenotypes based on gene expression profiling and GSEA: 'high' and 'low'.
A priori... -
Clinician looks for advice regarding classifiers
I'm a trained Hematologist but am new to research and genomic work. We want to develop a classifier for a gene and target genes; we have found in a cohort...
