Hello,
I am trying to determine how much of the unmapped reads from a transcriptome study align to viruses. My procedure so far has been...
3 results in 0.0023 seconds.
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Align unmapped reads to virus genomes
Last edited by SuzuBell; 10-23-2018, 05:45 PM. -
Error in htseq-count. Large gaps in CIGAR string
Hi,
I am getting this error when I run htseq-count (version 0.5.4p3)
Error occured in line 6684695 of file OUT.gsnap.combined.Control_72_Rep3_R1.fastq.uniq.... -
GSNAP Output
I have been able to run GSNAP on a 8GB, 8 cpu machine using the following command (executed from the GSNAP bin directory):
...Code:./gsnap --format=sam
