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garlic started a topic Difficulty using .gtf file in featureCounts read summarization

in Bioinformatics

07-28-2017, 01:33 PM
Difficulty using .gtf file in featureCounts read summarization

Hello,

I am doing differential expression analysis on an insect bacterial endosymbiont. I have Illumina HiSeq reads that are paired-end...

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edeka started a topic tophat gene information

in Bioinformatics

05-02-2016, 01:34 AM
tophat gene information

Hi all!
I used tophat2 with the option -G in order to give the gtf file but the output reported the chromosome coordinate. Why? What did I get...

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haritz_irizar started a topic featureCount with custom GTF file

in RNA Sequencing

03-02-2016, 07:56 AM
featureCount with custom GTF file

Hi all:

My name is Haritz Irizar and I am a postdoctoral fellow at the Icahn School of Medicine at Mount Sinai.

Working...

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