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bio_jit started a topic SNP and allele concept

in Bioinformatics

11-30-2018, 03:51 AM
SNP and allele concept

I did exom sequencing and annotate the VCF

now I have somthing like this

chr Ref Alt condition
chr1 A ...

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zeam started a topic Problems when calling SNPs using samtools mpileup

in Genomic Resequencing

11-29-2012, 07:37 PM
Problems when calling SNPs using samtools mpileup

Hi there,
Recently, I'm using samtools mpileup to call SNPs using low coverage (average 1x) resequencing data of 600+ populations. But I encountered...

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Last edited by zeam; 11-29-2012, 07:44 PM. Reason: Add some information

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