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volavii started a topic how do i find a specific sequence in a bam file?

in Bioinformatics

07-01-2013, 07:01 AM
how do i find a specific sequence in a bam file?

I want to extract special sequences out of my bam-file (reference-mapped with BWA).

normally i do that with blast or blat, but this time...

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lukemn started a topic high Q ambiguous SNPs from Maq

in Bioinformatics

07-19-2009, 12:07 AM
high Q ambiguous SNPs from Maq

Hello,

I'm doing mutation detection by ~30x Illumina genome resequencing on a haploid eukaryote.

Maq seems to be working fine...

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