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Assembling haplotypes of a highly heterozygous gene cluster with canu
I am trying to assemble haplotypes for a peculiar region of the human genome that (1) has high heterozygosity, (2) has variation in presence or absence... -
cannot find heterozygous peak through kmer spectrum
I simulate a diploid genome using pIRS (1.5% snp) and generated 25X Illumina pair-end reads, but from the 25-mer spectrum, i did not find any heterozygous... -
TristanB started a topic Compare avg fragment length of major/minor allele reads at heterozygous positionin GeneralCompare avg fragment length of major/minor allele reads at heterozygous position
Hi all,
I would like to compare average fragment length among reads contributing to a minor allele at a given heterozygous position vs... -
What's happening about my kmer spectrum? Heterozygous or repeats?
I am doing a denovo genome sequencing and i get the kmer spectrum using clean reads of two paired end libarary data(see attach files). From the plot,... -
heterozygosity and allele balance in NGS doubt
Hi,
I have data from a target enrichment on a few human genes, of course sequenced through NGS. Enrichment, sequencing and data analysis... -
Effects of Heterozygous and homozygous SNPS on RNA and Protein expression
Hello everyone, my name is Mamjoy. I am very new to this site but have been following the site keenly.
I have a question and I will be glad if... -
Samtools and intrasample diversity
Hi, Seqanswers community,
I need some help with my variant calling.
I am dealing with a monocellular organisms, and I am... -
keeping heterozygote information in fasta format from .bam files
Hi everyone,
I’m using the GATK “FastaAlternateReferenceMaker” walker to pull out candidate gene sequences from my .bam files. What... -
RNA seq and SNP discovery
Hi!
Iam new to this area of science and intend to go for RNA seq and SNP discovery of a highly heterozygous~4.8GB,tetraploid plant (without...
