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ManoloS7 started a topic hg19 vs hg38. Notable differences.

in Bioinformatics

04-20-2017, 06:27 AM
hg19 vs hg38. Notable differences.

Hi,

I’m working with some clinical exome sequencing data and I have a few questions.

I followed the GATK’s best practices...

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edeka started a topic vcf file hg 38

in Bioinformatics

10-04-2016, 01:38 AM
vcf file hg 38

Hi! where I can fine the indels.vcf file (Mills and 1000G gold standard) for hg38?

thank you in advance

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Sbamo started a topic HISAT2 vs. TopHat2: Discrepancies between Hg19 & Hg38

in RNA Sequencing

01-26-2016, 06:05 AM
HISAT2 vs. TopHat2: Discrepancies between Hg19 & Hg38

Hello everyone,

I have around 150 RNA-Seq datasets created using the Lexogen SENSE mRNA-Seq Library Prep Kit for Illumina, as well as around...

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Erinyes started a topic Peak annotation using HOMER

in Bioinformatics

01-15-2016, 02:37 AM
Peak annotation using HOMER

Hi all.

I have been using HOMER for ChIP-seq analysis quite some time now for mouse samples and I absolutely love it.

...

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