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apple_pie started a topic flagstat/ht-seq discrepancy

in Bioinformatics

08-17-2015, 06:09 AM
flagstat/ht-seq discrepancy

Hello,
I am trying to understand a discrepancy between alignment numbers reported by flagstat and ht-seq. I have a BAM file from tophat2 which...

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Yohann started a topic DEXSeq - Counting with HT-seq at the exon level

in Bioinformatics

05-07-2014, 08:10 AM
DEXSeq - Counting with HT-seq at the exon level

Hi!

I'm currently looking for differently expressed isoforms and got curious about the behaviour of HT-seq when counting exons. Basically,...

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Last edited by Yohann; 05-07-2014, 09:01 AM. Reason: found related thread

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