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Rob2012 started a topic htseq error

in Bioinformatics

11-08-2013, 02:16 PM
htseq error

Hi,

I used htseq-count this way:

htseq-count -m intersection-strict -s no aligned.sam SL1344.gtf > counts_X1
...

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CEPHSeq started a topic Creating a mRNA GTF file from fasta for HTSeq ?

in Bioinformatics

11-08-2012, 02:42 AM
Creating a mRNA GTF file from fasta for HTSeq ?

Hi,

I have a sam file (bwa) from paired end RNASeq short reads that was aligned to a CDS fasta file. I need to use HTSeq.counts on this...

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