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Annotating and finding genes of a non-model organism (no reference genome)
I desperately need some help in brainstorming how to approach my data. I have a de novo assembled genome of a non-model organism (no available reference... -
Merge multiple fq read files
I have multiple Illumina Hi-seq 2000 fastq.gz files for each individual as follows;
sample1 lane1 read 1_001
sample1 lane1 read 1_002... -
Howdy!
Greetings from Texas. I'm a PhD candidate in the field of evolutionary genetics, and I am here to do some population genomics with Illumina HiSeq data.... -
scaffolding GAII paired-end library with Hiseq mate-pairs
Hello,
we are a Belgian research team studying the +/- 4Mbp genome of a bacterial plant pathogen (and newbies in NGS data analysis). We are getting... -
bowtie command line for Illumina Hiseq 2000 with Illumina 1.5+ quality encoding files
I am trying to align some paired end exome reads with bowti, but despite using the bow tie -q" switch to recognize fast file, I keep getting the...Last edited by rworthi; 09-28-2011, 07:49 AM.
