Hi all,
I am doing some whole genomes. Each sample (2 samples, so 24 lanes in total) was run using 12 lanes of a solid5500 machine. for the post-sequence...
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Same sample - multiple lanes
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IndelRealigner ERROR
Whe I run IndelRealigner I get an ERROR like this. It is a whole screen of chrUn something, ending like this:
chrUn_AAEX03026059, chrUn_AAEX03026060,...
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GATK: VCF file for Local realignment around indels
Hello,
I'd like to perform a 'Local realignment around indels' on bam file uisng GATK. However I'm still unclear about the vcf file with...
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Duplicate Reads
Hi all,
I did a search of this forum and wasn't able to find a solution to my problem. Point me in a direction if this has already been...