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edeka started a topic TopHat- index file

in Bioinformatics

04-27-2016, 12:34 AM
TopHat- index file

Hi all!
I am usign TopHat2 and I get this error:
Beginning TopHat run (v2.0.10)
-----------------------------------------------...

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huan started a topic Tophat2 can't find Bowtie index files *.ebwt

in Bioinformatics

12-12-2015, 10:57 PM
Tophat2 can't find Bowtie index files *.ebwt

I have run tophat2 using cmd:
tophat2 --bowtie1 -p 6 -G /project/Ref_Genome/GRCm38.gtf -N 2 -r 40 --library-type fr-unstranded -o ./ /project/Ref_Genome/GRCm38.genome.fa...

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