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lies started a topic Aligning to a an ambiguous (IUPAC) reference in Mosaik

in Bioinformatics

02-13-2013, 10:18 AM
Aligning to a an ambiguous (IUPAC) reference in Mosaik

Hi all,

We are currently trying to design a pipeline for viral sequencing with Illumina. For the alignment, we were considering using...

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sdvie started a topic IUPAC ambiguous bases in vcf file?

in Bioinformatics

07-04-2012, 01:47 AM
IUPAC ambiguous bases in vcf file?

Dear all,

I have been variant calling from a reference that contains IUPAC ambiguous bases (such as K, W etc...), using samtools/bcftools....

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fenix started a topic Degenerate nucleotide mappers

in Bioinformatics

03-09-2011, 01:59 PM
Degenerate nucleotide mappers

Hi all,

I haven't exhaustively searched the literature, but to the best of my knowledge there aren't mapping tools that support degenerate...

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