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bioramg · 04-14-2020, 12:03 AM

Hi,
I would like to calculate the genome size from the whole genome ONT nanopore reads (~8.7 GB) for a plant genome. My aim is to assemble the...

Bourney · 02-11-2017, 02:20 AM

Hi there,

I've used jellyfish kmer count to estimate the genome size of a diploid organism. I get double peaks, which are expected, and...

JanosMucsi · 01-29-2017, 12:16 PM

Hi,

Given a Jellyfish output, I would like to estimate the overall sequencing error rate. We assume that the unique k-mers in this data...

gwilymh · 09-05-2015, 03:54 PM

I am trying to install trinity v2.0.6 on a Linux cluster, and am getting a strange error message after running ./configure and then make:

make[1]:

...

mandar.bobade60 · 02-09-2015, 11:05 PM

Dear all,
I have paired end as well as mate paired data for de novo assembly. The data size of paired end data is around 91 GB and around 100GB...

bioman1 · 08-14-2014, 08:36 PM

I came across the paper titled "The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes".(http://www.nature.co...

gkamath · 04-12-2014, 02:47 PM

Hi,

I was simulating a .fastq read set from a genome by reading random locations of the genome. My objective here was to test some read...

bioman1 · 04-02-2014, 12:52 AM

Dear all,

I am running jelly fish (jellyfish-2.1.1) for first time to estimate genome size. Although I followed manual, i am bit confused...

BethMH · 01-23-2014, 07:53 AM

Hi all,

I'm using Trinity for the first time on some data we've been sent by a colleague. I'm getting this error during the Jellyfish...

letusgo · 08-03-2013, 04:41 AM

Dear All,
i downloaded trinityrnaseq_r2013-02-25.tgz. when i used "make" after "tar zxf" it, there were some errors appeared...

Estimation of genome size from Nanopore using jellyfish