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traeki started a topic Refining tophat junction identification

in Bioinformatics

05-24-2011, 11:59 AM
Refining tophat junction identification

Summary: How can I best get tophat to use only high-confidence junctions?

Details:

I'm working with mRNA in yeast, and...

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d f started a topic TopHat closure-search: what does it do?

in Bioinformatics

11-10-2010, 12:00 PM
TopHat closure-search: what does it do?

What does the --closure-search option of TopHat do?

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anecsulea started a topic TopHat fails to catch error thrown by Bowtie, gives incomplete results

in Bioinformatics

06-02-2010, 06:15 AM
TopHat fails to catch error thrown by Bowtie, gives incomplete results

Hi,

I've recently discovered a strange behaviour in TopHat: it can sometimes give incomplete (or even incorrect) results, due to an error...

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