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frymor started a topic junction bed file from STAR

in Bioinformatics

09-22-2015, 02:50 AM
junction bed file from STAR

Hi everybody,

I am trying to create a junction file from the SJ.out.tab file of the STAR aligner.
I would like to see only those...

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frymor started a topic calculations of tophat BlockSizes and BlockStarts

in Bioinformatics

10-08-2014, 08:47 AM
calculations of tophat BlockSizes and BlockStarts

Hi,

I know it has been discussed here a few times, but no one really explain how it is done.

I have this example of a tophat...

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Last edited by frymor; 10-08-2014, 08:52 AM.
RHous started a topic CuffCompare basic question

in RNA Sequencing

11-17-2013, 11:14 AM
CuffCompare basic question

Hello,
I was wondering if the reads from the Cuff compare class code J (novel transcript) were also included in the top hat junctions.bed file....

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