Hello everyone,
I'm trying to sort out getting sleuth working with R. I currently have windows ubuntu subshell running and have installed...
8 results in 0.0021 seconds.
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Windows Ubuntu, Kallisto, R, sleuth, conda, bioconda, miniconda, bioconductor
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Trimming Fastq Reads for kallisto
Does kallisto match reads that are below that of the K-mer length used to
create the index? For example, the default K-mer value for creating the... -
No bam from kallisto or Salmon after piping into samtools
Hi all,
I am trying to generate the pseudo bam files from both Kallisto v45 and Salmon v13 and can't get either to pipe into Samtools and... -
Kallisto with paired-end bulk RNAseq with UMIs
Hi All,
i have a paired-end bulk RNAseq generated with UMIs in order to reduce duplicates from PCR
Since now, i used my own piepeline... -
Haplotypes in Ensembl cDNA confuse pseudo-alignment
Dear all,
Before I dive into details, my question is whether it is a sound idea to envisage:- an Ensembl "cdna" Fasta file that,
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visualisation of RNAseq (kallisto to IGV)
Hello everyone,
as others, I am quite excited about pseudo alignment produced by kallisto in minutes instead of real alignment computed... -
Viral gene in data
hi,
I have some RNA-seq data for human cell line samples and one of them expresses a viral gene, I would like to map and quantify the data... -
differential expression analysis in non-model species - best practice?
Hi All,
I've trawled the forums but have not found a complete discussion around this question: For RNA-seq DE analysis in non-model species,...
