The khmer suite has a workflow for partitioning reads based on graph-connectivity, which I want to test for a specific (huge) paired-end dataset.
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Partitioning huge paired-end datasets with the khmer suite
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kmer size and coverage cutoff for digital normalization using the khmer suite
Hi,
I want to use digital normalization on a set of single cell sequencing data as well as metagenomic date from low complexity communities....