Hello,
I am trying to build a costumed database, including all reference genomes of fungi, bacteria, archaea, viruses, and Homo sapiens.
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AzizNasr started a topic Kraken2 - unmapped sequences during the first step of building the databasein MetagenomicsKraken2 - unmapped sequences during the first step of building the database
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Human read filtering with Kraken 2
Hey everyone,
I was wondering something regarding the usage of Kraken 2 for read filtering.
I sequence/assemble viruses and inherited...Last edited by JasperGeh; 02-04-2020, 07:02 AM. -
Kraken - why not working anymore
Hello,
until recently, I was only using commercial softwares. Thus, I am new to Ubuntu and command-line tools.
I have installed... -
mutationalMeltdown started a topic Assigning taxonomy to shotgun metagenomic reads: sequence alignment or composition?in MetagenomicsAssigning taxonomy to shotgun metagenomic reads: sequence alignment or composition?
I'm interested in identifying bacterial pathogens from shotgun metagenomic data. Crudely, I envisage the pipeline to be something like this:
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