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Optimizing a ddRADSeq study with a large genome
I am designing a study to investigate the population genetic structure of an endangered species. We've decided to go the ddRADSeq route, and I have a... -
How long does velvetg take for large genomes?
Hi All,
I have a single lane of Illumina HiSeq 2000 101-bp paired end reads on a single genome (hop--est. genome size 2.8 Gb) along with two RNA-Seq...Last edited by genetics_jo; 04-05-2014, 07:36 AM. -
bwa 0.6.1-r104 segfault problem
Hi all,
I am working with a challenging genome (22 Gb haploid DNA content per nucleus, 18 Gb first-draft assembly in 31 million contigs), and using... -
RNA seq and SNP discovery
Hi!
Iam new to this area of science and intend to go for RNA seq and SNP discovery of a highly heterozygous~4.8GB,tetraploid plant (without... -
Cleanup and de novo assembly of a 2.9 Gb genome
Hi,
I am a Belgian researcher, working with large Illumina HiSeq paired end genomic datasets (500 Gb, enough for 30x coverage). Anyone...
