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Coding Courses @ Edinburgh Genomics
Edinburgh Genomics have a number of exciting coding courses coming up ranging from beginner to more advanced, so whether you’re just starting out on... -
Linux for Genomics Online Workshop @ Edinburgh Genomics
> Linux for Genomics Online Workshop**
> 23-24 September**
> https://genomics.ed.ac.uk/event/intr...-for-genomics/... -
No Signal from ClearLabs Inherited GridION?
Good Morning All,
Our lab has a Clear Labs automated sequencing system that we have been running with a GridION attached. Recently we've... -
Bashing irreproducibility with shournal
Don’t remember how u created that file last month? Trying to find out what u did last in that dusty project directory? Used a script without version...Last edited by ecSeq Bioinformatics; 08-05-2020, 11:35 PM. -
SPAdes update
I cannot remember how I did this the last time I updated. Trying to update to spades 3.14.1. Spades is set to /usr/local/bin/spades.py. I think it was... -
Problems understanding .cov files in Plink
I’m doing a GWAS using plink and I’m trying to write a covariant file. I can't get my head around the format of a covariant file or even how to write... -
docker installation for Guppy basecaller
Linux
Ubuntu 18.04
nvidia-docker2 (2.0.3+docker18.09.7-3).
Nvidia driver 410.57
cuda 10.1
error occurs aft... -
bcftools output type not recognized
I am trying to find a single SNP on a bunch of dog genomes in a compressed vcf file (vcf.gz) and I have been using bcftools to do so. I posted before... -
Course: New Bioinformatics courses at Edinburgh Genomics
Dear All
We have a selection of beginner friendly bioinformatics courses running at the Edinburgh Genomics sequencing facility this spring.... -
How to start a new column after every nth row?
Hi have a file(comma separated) with 3 columns. I want to start new column after every 4th row
Input:
col1,col2,col3
1,disease1,high... -
How do I read a variable from a text file in shell?
I want to insert in my script a value (string) that I would read from a text file.
For example: I have shell script
#!/bin/bash... -
HPC Scientific Computing Systems Administrator (Linux), Barcelona, Spain
High Performance Computing Linux Systems Administrator position available immediately
To apply, send CV and a cover letter with the contact... -
minKNOW (Linux Version)
Anyone used the linux variant of the minION software? (minKNOW)?
Does it work well?
Thanks,
Andor -
BRAKER1 fails: inappropriate ioctl for device
Hi all, I'm having a problem which is more linux related than biology related. I'm running the BRAKER1 pipeline (which involves Augustus and Gene-mark... -
UC Irvine HPC Admin
Hi All,
I'm part of UC Irvine's Research Computing Support group and we're looking to expand our group. We've won a 2 yr NSF CyberInfrastructure...Last edited by hjmangalam; 01-20-2016, 02:50 PM.
