Patchwork - allele-specific somatic CNAs in cancer (WGS)
We have developed an R package for allele-specific copy number analysis of whole genome sequenced tumor tissue, capable of handling normal cell content...
Control-FREEC: a tool for assessing copy number and allelic content using NGS data
Control-FREEC enables automatic calculation of copy number and allelic content profiles from next generation sequencing data, and consequently predicts...