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julio.fernandez.banet started a topic tophat2 fail while running long_spanning_reads with out_of_range error.

in RNA Sequencing

08-06-2013, 05:52 PM
tophat2 fail while running long_spanning_reads with out_of_range error.

Hi all,

I am running tophat v2.0.9 on a set of samples using the --fusion-search option.
While I managed to successfully run tophat...

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Sniwells started a topic Tophat2 "joining segment hits" does not complete

in Bioinformatics

10-17-2012, 10:06 AM
Tophat2 "joining segment hits" does not complete

Tophat2 runs nicely (6 hours) up to the step "joining segment hits". But this step (single core process, named "long_spanning_reads")...

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Last edited by Sniwells; 10-17-2012, 11:20 AM.

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