Hello,
I'am working on paired-ends chip-seq analysis.
Which one is better for peak calling? macs2 OR macs14?
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chip-seq data analysis with galaxy
Hi all! I am very new to this field, so I apologize in advance for my ignorance. I have done several chip-seq experiments on a protein from A.thaliana...
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Background regions for de novo Motif Discovery?
Hello everyone,
I posted this also on Biostars a couple of days ago, not sure where I can find someone to help me.
I'm trying...
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Hello and MACS-1.4.2 installation questions
Hey everyone! I just started processing fastq files, making .bam files, and now I'm working on installing and running MACS-1.4.2. As a newbie to this...
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p-value for peak-calling using MACS
Hi I am trying to do peak-calling using MACS for some of my H3K4me3 ChIP-seq data. Using the default p-value of 1e-5 I only obtained 500+ peaks. But if...