8 results in 0.0025 seconds.
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Issue with Tophat and Bowtie2
So I've been using Tophat (running bowtie2) for various RNA-seq mapping projects and using default Tophat settings will get more than 75% mapping on first... -
Genome Mappability Analyzer
Hi, Everybody,
Has anyone ever used Genome Mappability Analyzer (http://www.ncbi.nlm.nih.gov/pubmed/?...ility+analyzer)?... -
Filter reads by mappability, unique reads, not more than 1 mismatches
Hi all,
I am working with ChIP-seq data and want to filter the reads with the following criteria: (A) mappable reads; (B) unique alignments (most... -
How is the p-value for MAPQ calculated in Bowtie2?
Hi everyone,
I would like to obtain some kind of metric that represents how uniquely a sequence maps to the genome. Similar, in principle,... -
repeats
I am trying to find a repeat regions (not Transposons). Is there a way i can find a 50 bp region repeating across the genome ?. Need to find the number... -
Calculate mappability for an interval?
Hi all,
I downloaded the mappability file from here:
ftp://encodeftp.cse.ucsc.edu/pipelin...odeMapability/
then...Last edited by Vasilisa; 01-16-2013, 09:06 AM. -
Calculate mappability for an interval?
Hi all,
I downloaded the mappability file from here:
ftp://encodeftp.cse.ucsc.edu/pipelin...odeMapability/
...Last edited by Vasilisa; 01-16-2013, 07:10 AM. -
Mappability File
Hi Im kind of new in linux and I am trying to create a Mappability File using the executables and instructions that are part of peakseq that are here...
