Hi all,
I am in the middle of testing the hisat2 mapper and encountered a discrepancy between the output hisat2 gives me at the end of the mapping...
8 results in 0.0028 seconds.
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hisat2 output more reads than are in the file
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Newbler GSmapper output numMappedReads 2 results
Hello, I am wondering why I get two very different results in the metrics of the Newbler GSmapper
numMappedReads = 362295,... -
Count the Number of Paired-End Reads Mapped by Tophat
Dear all,
My paired end reads were mapped using Tophat 2.0.8. Suppose that original number of reads before mapping were (X) reads. I want... -
Bowtie tags for dUTP strand specifc RNA-seq
Hello,
I'm new to this area and I just wanted to confirm I'm not missing out on something important. I have RNA-seq strand specific, single... -
Number of Mapped reads
Hi all,
I want to count the total number of mapped reads onto the reference genome.
I have .sai and .sam files. Which of these files... -
Mapper with annotation support
I am looking for a mapping software that can handle Genbank formatted files as input.
I plan on mapping 454 cDNA reads back to this reference so... -
Mapper to extned contigs
Hello all,
Which mapping software would you use if you are looking to map reads back to a set of contigs, and most importantly, extend... -
tophat - basic question - mapped reads
I have just done my first attempts at mapping reads/splice junctions with tophat and bowtie.
When bowtie is run independently, you get...
