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dovah started a topic RSII mapper benchmarking

in Pacific Biosciences

08-03-2016, 10:56 PM
RSII mapper benchmarking

Hi all,

I have RNA sequencing data (D. melanogaster) from 3 libraries (1-2Kb, 2-3Kb, 3-7Kb). What would be your suggestion for a mapper?...

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dovah started a topic ONT MinION mapper benchmarking

in Oxford Nanopore

08-03-2016, 10:51 PM
ONT MinION mapper benchmarking

Hi all,

I have RNA sequencing data (D. melanogaster) from r7 and r9 flowcells. What would be your suggestion for a mapper? I'm mostly...

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hclee started a topic Mapping very short (<20 bp) reads

in Bioinformatics

07-14-2011, 08:35 PM
Mapping very short (<20 bp) reads

Hi,

I've been a SOAP2 user but recently got some very short reads (<20 bp) to map to a reference genome. Can someone please suggest...

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Anelda started a topic 454AlignmentInfo.tsv correlation to contigs

in Bioinformatics

08-31-2010, 01:00 AM
454AlignmentInfo.tsv correlation to contigs

Hi all,

I have done reference mapping using gsMapper. I want to calculate depth of coverage for various contigs obtained. According to...

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