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koustavpal started a topic read length a problem when mapping with MAQ

in Bioinformatics

08-27-2012, 10:28 PM
read length a problem when mapping with MAQ

Hi,

I have a file containing 36.8 million reads, as suggested in the MAQ manual I divided the file so that i had files containing 2 million...

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AnamikaDarwin started a topic MAQ Alignment Depth

in Bioinformatics

01-07-2009, 07:48 AM
MAQ Alignment Depth

Hello,

Is it possible to get the alignment depth after one aligns with maq map? I want to compute how many reads align for a defined window...

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