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johnsequence started a topic percentage of SNP calling in MAQ

in Bioinformatics

01-06-2010, 01:35 PM
percentage of SNP calling in MAQ

How to show directly the percentage of SNP calling in the final.snp file generated from MAQ, that is, how many percent of ATGC in this final SNP report....

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AnamikaDarwin started a topic maq 2nd and 3rd likely SNP Calls

in Bioinformatics

07-24-2009, 08:00 AM
maq 2nd and 3rd likely SNP Calls

Hello,

I use the maq snp caller for snp calling on a diploid organism. The filtered maq snp report gives the most likely, 2nd likely and...

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