When I should use discontinuous Megablast instead of Megablast? I do not know which blast is better to use for nucleotide blast.
I read...
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Megablast x dc-megablast
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Blastn x megablast - homologous genes
I have a list of nucleotide sequences (genes) and I would like to Blast against a list of nucleotide sequences from other species to check potential homologous...Last edited by clarissaboschi; 02-01-2017, 01:31 PM. -
Help with custom database of a genera and count of hits (NGS, 454)
Hello biologists and bioinformaticians around the world!
I'm having serious problems to accomplish a task.
I need to perform... -
Preparing reference transcriptome: to or not to megablast
A quick question here. I am constructing a reference transcriptome for DE out of 16 transcriptomes (8 control + 8 treatment) and my strategy is as follows:... -
What tools can I use to assign taxonomic rank to megablast outputs?
I have a couple of transcriptomic sequences that were generated with different sequencing platforms such as Miseq and Hiseq. The output format is hence... -
indexing the nt database with makembindex to improve blastn (task megablast) runtime
I am trying to dust mask the NT database and then to index it using makembindex. However, when I run megablast on the indexed and dust masked nt database...
