Hi I am using FIMO to find all the significant+non-significant occurrences of a motif in a set of input sequences.
Sometimes I am getting an isolated...
12 results in 0.0022 seconds.
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meme motifs
Hi
Is there a predefined way to pick number of motifs parameter in MEME?
By default meme may find only 1 motif according to the manual... -
MEME motif discovery
Hi
I have a question on meme motif discovery and strand of the sequence.
When discovering motifs does MEME considers by default both forward... -
E-value of MEME
Hello everyone,
Could you tell me about the calculation formula of E-value?
I could not find the calculation formula for E-value of... -
Motif enrichment in MEME - CentriMo
Hello,
I have a list of differentially epxressed gene for which I would like to see whether they are enriched over background (non DE genes) for... -
E-Values calculation (MEME)
I'm trying to understand how MEME's E-values are calculated but can't find how could I reproduce a simple case with a few sequences, a PSPM and an E-value... -
Motif finding for many clusters
I thought this might well be useful for some: when you have to do motif finding for a large number of gene clusters it can be a challenge processing all...Last edited by SaschaOtt; 09-26-2014, 10:57 AM. -
MEME centrimo peak validation with known sequence
Hi!
I have done a chip-seq experiment and obtained a number of peaks. Using MACS v1.4 I obtained 1262 peaks with IDR < 0.01 between... -
MEME for large datatset
Hi,
I am using MEME without any problem for input dataset of about 6 million bases. Whereas I am facing problem in datatset of about 17 million.... -
MEME parameters
Have anyone here used MEME tools? Specifically with de novo motif discovery using meme
Can you share your experience on choosing the parameters,... -
AME (MEME Suite) error
Hello.
I am trying to run AME from the MEME suite. I have tried to run it 2 times, 1st within the MEME suite, which has a option limited AME installation,...Last edited by songtree; 10-24-2012, 10:05 AM. -
Problem with MEME installation
Has anyone else installed MEME recently? i.e. http://meme.sdsc.edu/meme/intro.html
When I run the installation at one point it calls for...
