Dear all,
We have made experiments either paired-end AND single-end on the same sample. Next, the 2 corresponding BAM files has been merged, making...
5 results in 0.0022 seconds.
-
Counts on single and paired ends reads merged bam file
-
how do i create an rg.txt file for input into samtools merge? / picard
Hi,
I have merged bam files from 6 lanes for a number of samples, and am trying to use picard MarkDuplicates. However, I get an error PicardException:... -
loss of bases using mpileup
I have noticed a problem with mpileup (samtools) that results in a large loss of reads for certain base positions, with some bases being entirely absent.... -
samtools & flagstat & awk
Hi,
Here is my command :
$ samtools merge L002_LBCO1.bam L002_LBCO1_chr*.bam
$ samtools view L002_LBCO1.bam | awk '$3==... -
GATK calling Merged Bam files
Dear All,
can share your idea? i have tried to merge my bam files (bam file1, bam file2...so on) using samtools and picard. After then,...
