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Alignment of ONT data in a Java program through processBuilder
I have a Java-based program for alignment and variant calling. So far we have been using only illumina reads and relied on Bowtie2, which generated great... -
ErikTheNord started a topic error/mismatch rate threshold for long-read alignment with GMAP or minimap2in Generalerror/mismatch rate threshold for long-read alignment with GMAP or minimap2
Hello all -- my bioinformatics experience is mostly with mapping Illumina reads (to mammalian transcriptomes) using STAR. But lately my group is starting... -
alignment view and vcf disagree
I have a pacbio CCS fastq file that I have aligned to a small (5037 bp) reference which is part of a sequenced BAC clone. I have aligned this data with...
